Troubleshooting for AWS Batch & Nextflow

CannotPullImageManifestError: Error response from daemon: manifest unknown: manifest unknown 

Solution

Check your docker image.

bash: aws: command not found

Solution

Check your container image has the aws cli program.

https://www.nextflow.io/docs/latest/aws.html#custom-ami

ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting

Solution

Check the .nextflow.log file content. There may be various causes, but this appears to be because the token has expired.